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Integrative analysis of genomic alterations in triple-negative breast cancer in association with homologous

recombination deficiency

Kawazu M et al. PLoS Genet. 2017 Jun 21;13(6):e1006853. doi: 10.1371/journal.pgen.1006853. PMID: 28636652.

Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases

Greer SU et al. Genome Med. 2017 Jun 19;9(1):57. doi: 10.1186/s13073-017-0447-8. PMID: 28629429.

Universal haplotype-based noninvasive prenatal testing for single gene diseases

Hui WW et al. Clin Chem. 2017 Feb;63(2):513-524. doi: 10.1373/clinchem.2016.268375. PMID: 27932412.

Genome-wide reconstruction of complex structural variants using read clouds

Spies N et al. 2016 Sept 10; Pre-print*.

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Zook JM et al. Sci Data. 2016 Jun 7;3:160025. doi: 10.1038/sdata.2016.25. PMID: 27271295.

Direct determination of diploid genome sequences

Weisenfeld NI et al. Genome Res. 2017 May;27(5):757-767. doi: 10.1101/gr.214874.116. PMID: 28381613.

Single-Cell transcriptome sequencing of 18,787 human induced pluripotent stem cells identifies differentially primed subpopulations

Nguyen Q et al. 2017 Mar 22; Pre-print*.

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning

Wang B et al. Nat Methods. 2017 Apr;14(4):414-416. doi: 10.1038/nmeth.4207. PMID: 28263960.

ABySS 2.0: Resource-efficient assembly of large genomes using a Bloom filter

Jackman SD et al. Genome Res. 2017 May;27(5):768-777. doi: 10.1101/gr.214346.116. PMID: 28232478.

ARCS: Assembly roundup by Chromium scaffolding

Yeo S et al. 2017 Jan 17; Pre-print*.

Massively parallel digital transcriptional profiling of single cells

Zheng GX et al. Nat Commun. 2017 Jan 16;8:14049. doi: 10.1038/ncomms14049. PMID: 28091601.

A multiplexed single-cell CRISPR screening platform enables systematic dissection of the unfolded protein response

Adamson B et al. Cell. 2016 Dec 15;167(7):1867–1882. doi: 10.1016/j.cell.2016.11.048. PMID: 27984733.

Perturb-Seq: Dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens

Dixit A et al. Cell. 2016 Dec 15;167(7):1853–1866. doi: 10.1016/j.cell.2016.11.038. PMID: 27984732.

Universal haplotype-based noninvasive prenatal testing for single gene diseases

Hui WW et al. Clin Chem. 2017 Feb;63(2):513-524. doi: 10.1373/clinchem.2016.268375. PMID: 27932412.

De novo assembly and phasing of a Korean human genome

Seo JS et al. Nature. 2016 Oct 5;538(7624):243-247. doi: 10.1038/nature20098. PMID: 27706134.

Assembly of the complete Sitka Spruce chloroplast genome using 10x Genomics’ GemCode sequencing data

Coombe L et al. PLoS One. 2016 Sep 15;11(9):e0163059. doi: 10.1371/journal.pone.0163059. PMID: 27632164.

Genome-wide reconstruction of complex structural variants using read clouds

Spies N et al. 2016 Sept 10; Pre-print*.

A hybrid approach for de novo human genome sequence assembly and phasing

Mostovoy Y et al. Nat Methods. 2016 Jul;13(7):587-90. doi: 10.1038/nmeth.3865. PMID: 27159086.

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Zook JM et al. Sci Data. 2016 Jun 7;3:160025. doi: 10.1038/sdata.2016.25. PMID: 27271295.

Health and population effects of rare gene knockouts in adult humans with related parents

Narasimhan VM et al. Science. 2016 Apr 22;352(6284):474-7. doi: 10.1126/science.aac8624. PMID: 26940866.

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing

Zheng GX et al. Nat Biotechnol. 2016 Mar;34(3):303-11. doi: 10.1038/nbt.3432. PMID: 26829319.

Haplotypes drop by drop

Kitzman JO. Nat Biotechnol. 2016 Mar;34(3):296-8. doi: 10.1038/nbt.3500. PMID: 26963554.

Integrative analysis of genomic alterations in triple-negative breast cancer in association with homologous

recombination deficiency

Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases

Universal haplotype-based noninvasive prenatal testing for single gene diseases

Genome-wide reconstruction of complex structural variants using read clouds

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Direct determination of diploid genome sequences

Single-Cell transcriptome sequencing of 18,787 human induced pluripotent stem cells identifies differentially primed subpopulations

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning

ABySS 2.0: Resource-efficient assembly of large genomes using a Bloom filter

ARCS: Assembly roundup by Chromium scaffolding

Massively parallel digital transcriptional profiling of single cells

A multiplexed single-cell CRISPR screening platform enables systematic dissection of the unfolded protein response

Perturb-Seq: Dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens

Universal haplotype-based noninvasive prenatal testing for single gene diseases

De novo assembly and phasing of a Korean human genome

Assembly of the complete Sitka Spruce chloroplast genome using 10x Genomics’ GemCode sequencing data

Genome-wide reconstruction of complex structural variants using read clouds

A hybrid approach for de novo human genome sequence assembly and phasing

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Health and population effects of rare gene knockouts in adult humans with related parents

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing

Haplotypes drop by drop

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